PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010109934.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 452aa    MW: 50075.9 Da    PI: 8.4305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010109934.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.13.9e-07262284123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_010109934.1 262 HYCQVCGKGFKRDANLRMHMRAH 284
                     68*******************99 PP

2zf-C2H211.70.00082358381123
                     EEETTTT.EEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                     y+C++C+ k Fs  s+L++H + +
  XP_010109934.1 358 YVCKKCNrKEFSLLSDLRTHEKHC 381
                     9*******************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-7262323IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034262284IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.83E-6262284No hitNo description
PROSITE profilePS5015712.653262289IPR007087Zinc finger, C2H2
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
SMARTSM0035571320353IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.83E-6353379No hitNo description
SMARTSM0035515358380IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MNISGSDTSR YTNLSPAGLS LQMYSMADQD HHDDHDHHDQ VPSNSHLQPN NSTALGSLLY  60
SLSILKDKVH QLQSLVAILL SAAADSSASI ASINTQNAIH EIVMTASSML FNFQHTGVAS  120
TSGNPSTTHH DNNNDNNSPN PNIIGNAGLL SSSKSIGQGL IYPSTHDHHQ TVLDWYGSPH  180
DDQTYNNSTC TTSPIKENKF NSTTSNHMIM TQYSKDHRVE ENTFPLALGS ETKNGQGAVS  240
APKINQDIIE LGAADLLAKY THYCQVCGKG FKRDANLRMH MRAHGDEYKT SSALSNPMKR  300
INNDRIGNIN RDFSTASKKY SCPQGGCRWN QRHAKFQPLK SMICVKNHYK RSHCPKMYVC  360
KKCNRKEFSL LSDLRTHEKH CGDLKWQCSC GTTFSRKDKL LGHVSLFVGH TPVMMNDASS  420
STNNNNNNNK TTKVESQLVS HVDQIDGIVK MM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109934.10.0Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLW9S3S40.0W9S3S4_9R
STRINGVIT_06s0061g00780.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-87C2H2 family protein